We scanned soybean and Arabidopsis seed genomes for hypomethylated regions, or DNA methylation valleys (DMVs), present in mammalian cells. Seeds contain DMV regions that have <5% bulk DNA methylation or, in many cases, no detectable DNA methylation. Methylation levels of seed DMVs do not vary detectably during seed development and are present prior to fertilization.

Rice blast disease, caused by Magnaporthe oryzae, results in an extensive loss of rice productivity. Previously, we identified a novel M. oryzae secreted protein, termed MSP1 which causes cell death and pathogen-associated molecular pattern (PAMP)-triggered immune (PTI) responses in rice. Here, we report the transcriptome profile of MSP1-induced response in rice, which led to the identification of 21,619 genes, among which 4,386 showed significant changes (P < 0.05 and fold change > 2 or < 1/2) in response to exogenous MSP1 treatment

The use of heterologous systems to express spider silk has become an attractive method. However, achieving cost-effective production and high yields is still challenging. Here, we describe the establishment of a targeted gene replacement system in Bombyx mori to express the major ampullate spidroin-1 gene (MaSp1) from the spider Nephila clavipes. With the aid of transcription activator-like effector nuclease-mediated homology-directed repair

The rice seedling blight fungus Rhizopus microsporus harbors endosymbiotic bacteria (Burkholderia rhizoxinica) that produce the virulence factor rhizoxin and control host development. Genome mining indicated a massive inventory of cryptic non-ribosomal peptide synthetase (NRPS) genes, which have not yet been linked to any natural products. We report the discovery and full characterization of a novel cyclopeptide from endofungal bacteria.

Cold stress is a major factor limiting production and geographic distribution of rice (Oryza sativa). Although the growth range of japonica subspecies has expanded northward compared to modern wild rice (O. rufipogon), the molecular basis of the adaptation remains unclear. Here we report bZIP73, a bZIP transcription factor-coding gene with only one functional polymorphism (+511 G>A) between the two subspecies japonica and indica, may have facilitated japonica adaptation to cold climates.

Recent progress in development of the CRISPR/Cas9 system has been shown to be an efficient gene-editing technology in various organisms. We recently developed a novel method called Genome-editing via Oviductal Nucleic Acids Delivery (GONAD) in mice; a novel in vivo genome editing system that does not require ex vivo handling of embryos, and this technology is newly developed and renamed as “improved GONAD” (i-GONAD).

Tragopogon (Asteraceae) is an excellent natural system for studies of recent polyploidy. Development of an efficient CRISPR/Cas9-based genome editing platform in Tragopogon will facilitate novel studies of the genetic consequences of polyploidy. Here, we report our initial results of developing CRISPR/Cas9 in Tragopogon. We have established a feasible tissue culture and transformation protocol for Tragopogon.

Changes in land use, climate, and agricultural technologies affect pest severity and management. We analyzed long-term longitudinal data (1991–2015) on three major cotton pests for 51 Chinese counties. Bacillus thuringiensis (Bt) insect-resistant cotton had pervasive effects on the whole pest complex and its management. Adoption resulted in major reductions in insecticide use against bollworm. The resulting restoration of aphid biocontrol decreased aphid severity.

Peel color is one of the important agronomic traits of cucumber (Cucumis sativus L.). However, studies on the molecular regulation mechanism of peel color in cucumber are few. In this study, a cucumber yellow green peel mutant (ygp) of cucumber mutagenized with ethylmethylsulfone by using a wild type cucumber with dark green peel was identified. Pigment measurements indicated that the chlorophyll content of the ygp mutant was less than that of the wild type.

Efficient removal of bio-recalcitrant dissolved organic matter (DOM) and colorants is essential for discharging or reusing the distillery wastewater. The present work adopted a novel microbubble system - Fe(III)-coagulant-modified colloidal gas aphrons (CGAs) in flotation as tertiary treatment of the bio-chemically treated cassava distillery wastewater. Approximately 93% of bio-recalcitrant color and around 79% of dissolved organic carbon (DOC) were removed at the initial pH of 9.0 and 7.1, individually